PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g014180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 208aa    MW: 23005.7 Da    PI: 9.9018
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g014180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-056384223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C++Cgk F ++  L  H++ H
  Csa17g014180.1 63 ECQYCGKEFANSQALGGHQNAH 84
                    7******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-66089No hitNo description
Gene3DG3DSA:3.30.160.603.6E-56088IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8016289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSISPTMSRT GESSSGSSSD KTIKLFGFEL ISGNRSPEIT TAESVSSSTN TTTTSLTVVK  60
RLECQYCGKE FANSQALGGH QNAHKKERLK KKRLQLQARR ASIGYYLTSH QQPITTAFQG  120
QYQTPSYCAF SSMHVNNNQM GVYNEDWSTP MSSQISFGNK NTCQDLNEQS GEMGKMYGVR  180
PNMIQFQRDL TSRSGSKRSI KSLDLHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934460.0AB493446.1 Arabidopsis thaliana At1g10480 mRNA for hypothetical protein, partial cds, clone: RAAt1g10480.
GenBankAC0070670.0AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankATHZFPE0.0L39648.1 Arabidopsis thaliana zinc finger protein (ZFP5) mRNA, complete cds.
GenBankAY0863020.0AY086302.1 Arabidopsis thaliana clone 23664 mRNA, complete sequence.
GenBankBT0248400.0BT024840.1 Arabidopsis thaliana At1g10480 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475911.11e-154PREDICTED: zinc finger protein 5
SwissprotQ392641e-110ZFP5_ARATH; Zinc finger protein 5
TrEMBLV4KDK61e-113V4KDK6_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.1__1115__AT1G10480.11e-108(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.14e-98zinc finger protein 5